質問の要点を分かりやすくするために、ソースコードを簡略化しました。
サイト関係者に迷惑をかけまして、申し訳ありませんでした。

質問ですが、画面を見ていただけると分かりますが、selectのそれぞれのカラーボタン(D・F・H・M・S)を同一色に押した場合、時計全体の色を付けるCボタンそのものの色も同じになるように設定したいのです。1つでも違う色が設定されれば、Cボタンは白になるように設定しています。

もう1つの質問は、一度時計を消したら、好みに設定した時計の色をその背景色のときの初期の状態に戻すようにしたいのです。
ソースコードでは、背景色がsilverのときの初期の時計の色は"mediumblue",背景色がmediumblueのときの初期の時計の色は"black",背景色が"black"のときの初期の時計の色は"silver"と設定しています。

2つの質問とも"ifの条件式"で組み立てる必要があると思いますが、うまくいかなくて頭が混乱しています。ご教示お願いします。

<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN">
<html>
  <head>
    <meta http-equiv="Content-Type" content="text/html; charset=shift_jis"> 
    <meta http-equiv="Content-Script-Type" content="text/javascript">

    <title></title>

    <style type="text/css">
    <!--
    .butt {
        BACKGROUND:maroon; 
        COLOR:gold;
    }
    #clock {
        color:silver;
    }
    #clockCOLOR {
        background:lightpink;
        background-color:silver;
        color:black;
    }
    #color1 {
        background:lightpink;
        background-color:silver;
        color:black;
    }
    #color2 {
        background:lightpink;
        background-color:silver;
        color:black;
    }
    #color3 {
        background:lightpink;
        background-color:silver;
        color:black;
    }
    #color4 {
        background:lightpink;
        background-color:silver;
        color:black;
    }
    #color5 {
        background:lightpink;
        background-color:silver;
        color:black;
    }
    //-->
    </style>

    <script type="text/javascript"> 
    <!--
    function bg1() {
        document.bgColor = "silver";
        document.getElementById('Od').style.color='mediumblue';
        document.getElementById('Of').style.color='mediumblue';
        document.getElementById('Oh').style.color='mediumblue';
        document.getElementById('Om').style.color='mediumblue';
        document.getElementById('Os').style.color='mediumblue';
        document.getElementById("clockCOLOR").style.background="mediumblue";
        document.getElementById("color1").style.background="mediumblue";
        document.getElementById("color2").style.background="mediumblue";
        document.getElementById("color3").style.background="mediumblue";
        document.getElementById("color4").style.background="mediumblue";
        document.getElementById("color5").style.background="mediumblue";
    }
    function bg2() {
        document.bgColor = "mediumblue";
        document.getElementById('Od').style.color='black';
        document.getElementById('Of').style.color='black';
        document.getElementById('Oh').style.color='black';
        document.getElementById('Om').style.color='black';
        document.getElementById('Os').style.color='black';
        document.getElementById("clockCOLOR").style.background="black";
        document.getElementById("color1").style.background="black";
        document.getElementById("color2").style.background="black";
        document.getElementById("color3").style.background="black";
        document.getElementById("color4").style.background="black";
        document.getElementById("color5").style.background="black";
    }
    function bg3() {
        document.bgColor = "black";
        document.getElementById('Od').style.color='silver';
        document.getElementById('Of').style.color='silver';
        document.getElementById('Oh').style.color='silver';
        document.getElementById('Om').style.color='silver';
        document.getElementById('Os').style.color='silver';
        document.getElementById("clockCOLOR").style.background="silver";
        document.getElementById("color1").style.background="silver";
        document.getElementById("color2").style.background="silver";
        document.getElementById("color3").style.background="silver";
        document.getElementById("color4").style.background="silver";
        document.getElementById("color5").style.background="silver";
    }
    //-->
    </script>

    <script type="text/javascript">
    <!--
    function clockCOLOR1() {
        document.getElementById("Od").style.color="silver";
        document.getElementById("Of").style.color="silver";
        document.getElementById("Oh").style.color="silver";
        document.getElementById("Om").style.color="silver";
        document.getElementById("Os").style.color="silver";
        document.getElementById("clockCOLOR").style.background="silver";
        document.getElementById("color1").style.background="silver";
        document.getElementById("color2").style.background="silver";
        document.getElementById("color3").style.background="silver";
        document.getElementById("color4").style.background="silver";
        document.getElementById("color5").style.background="silver";
    }
    function clockCOLOR2() {
        document.getElementById("Od").style.color="mediumblue";
        document.getElementById("Of").style.color="mediumblue";
        document.getElementById("Oh").style.color="mediumblue";
        document.getElementById("Om").style.color="mediumblue";
        document.getElementById("Os").style.color="mediumblue";
        document.getElementById("clockCOLOR").style.background="mediumblue";
        document.getElementById("color1").style.background="mediumblue";
        document.getElementById("color2").style.background="mediumblue";
        document.getElementById("color3").style.background="mediumblue";
        document.getElementById("color4").style.background="mediumblue";
        document.getElementById("color5").style.background="mediumblue";
    }
    function clockCOLOR3() {
        document.getElementById("Od").style.color="black";
        document.getElementById("Of").style.color="black";
        document.getElementById("Oh").style.color="black";
        document.getElementById("Om").style.color="black";
        document.getElementById("Os").style.color="black";
        document.getElementById("clockCOLOR").style.background="black";
        document.getElementById("color1").style.background="black";
        document.getElementById("color2").style.background="black";
        document.getElementById("color3").style.background="black";
        document.getElementById("color4").style.background="black";
        document.getElementById("color5").style.background="black";
    }
    function Col11() {
        document.getElementById("Od").style.color="silver";
        document.getElementById("color1").style.background="silver";
        document.getElementById("clockCOLOR").style.background="white";
    }
    function Col12() {
        document.getElementById("Od").style.color="mediumblue";
        document.getElementById("color1").style.background="mediumblue";
        document.getElementById("clockCOLOR").style.background="white";
    }
    function Col13() {
        document.getElementById("Od").style.color="black";
        document.getElementById("color1").style.background="black";
        document.getElementById("clockCOLOR").style.background="white";
    }
    function Col21() {
        document.getElementById("Of").style.color="silver";
        document.getElementById("color2").style.background="silver";
        document.getElementById("clockCOLOR").style.background="white";
    }
    function Col22() {
        document.getElementById("Of").style.color="mediumblue";
        document.getElementById("color2").style.background="mediumblue";
        document.getElementById("clockCOLOR").style.background="white";
    }
    function Col23() {
        document.getElementById("Of").style.color="black";
        document.getElementById("color2").style.background="black";
        document.getElementById("clockCOLOR").style.background="white";
    }
    function Col31() {
        document.getElementById("Oh").style.color="silver";
        document.getElementById("color3").style.background="silver";
        document.getElementById("clockCOLOR").style.background="white";
    }
    function Col32() {
        document.getElementById("Oh").style.color="mediumblue";
        document.getElementById("color3").style.background="mediumblue";
        document.getElementById("clockCOLOR").style.background="white";
    }
    function Col33() {
        document.getElementById("Oh").style.color="black";
        document.getElementById("color3").style.background="black";
        document.getElementById("clockCOLOR").style.background="white";
    }
    function Col41() {
        document.getElementById("Om").style.color="silver";
        document.getElementById("color4").style.background="silver";
        document.getElementById("clockCOLOR").style.background="white";
    }
    function Col42() {
        document.getElementById("Om").style.color="mediumblue";
        document.getElementById("color4").style.background="mediumblue";
        document.getElementById("clockCOLOR").style.background="white";
    }
    function Col43() {
        document.getElementById("Om").style.color="black";
        document.getElementById("color4").style.background="black";
        document.getElementById("clockCOLOR").style.background="white";
    }
    function Col51() {
        document.getElementById("Os").style.color="silver";
        document.getElementById("color5").style.background="silver";
        document.getElementById("clockCOLOR").style.background="white";
    }
    function Col52() {
        document.getElementById("Os").style.color="mediumblue";
        document.getElementById("color5").style.background="mediumblue";
        document.getElementById("clockCOLOR").style.background="white";
    }
    function Col53() {
        document.getElementById("Os").style.color="black";
        document.getElementById("color5").style.background="black";
        document.getElementById("clockCOLOR").style.background="white";
    }
    //-->
    </script>
  </head>

  <body bgcolor="black">
    <div id="clock" style="visibility:hidden">
      <div id="Od" style="position:absolute;top:0px;left:0px">
        <div style="position:relative">
        </div>
      </div>
      <div id="Of" style="position:absolute;top:0px;left:0px">
        <div style="position:relative">
        </div>
      </div>
      <div id="Oh" style="position:absolute;top:0px;left:0px">
        <div style="position:relative">
        </div>
      </div>
      <div id="Om" style="position:absolute;top:0px;left:0px">
        <div style="position:relative">
        </div>
      </div>
      <div id="Os" style="position:absolute;top:0px;left:0px">
        <div style="position:relative">
        </div>
      </div>
    </div>

    <script type="text/javascript">

    (function() {
        "use strict";

        function $(sel) {
            return document.getElementById(sel);
        }   

        function $$(sel) {
          if (typeof document.getElementsByClassName === 'undefined') {
              return document.getElementsByName(sel);
          }
          return document.getElementsByClassName(sel);
        }

        var dCol = '', //date colour.
            sCol = '', //seconds colour.
            mCol = '', //minutes colour.
            hCol = '', //hours colour.
            fCol = '', //face color
            ClockHeight = 40,
            ClockWidth = 40,
            ClockFromMouseY = 0,
            ClockFromMouseX = 100,
            d = ["Sunday", "Monday", "Tuesday", "Wednesday", "Thursday", "Friday", "Saturday"],
            m = ["January", "February", "March", "April", "May", "June", "July", "August", "September", "October", "November", "December"],
            date = new Date(),
            day = date.getDate(),
            year = date.getYear() + 1900;

        var TodaysDate = " " + d[date.getDay()] + " " + day + " " + m[date.getMonth()] + " " + year;
        var D = TodaysDate.split('');
        var H = '...';
        H = H.split('');
        var M = '....';
        M = M.split('');
        var S = '.....';
        S = S.split('');
        var Face = '1 2 3 4 5 6 7 8 9 10 11 12',
            font = 'Helvetica, Arial, sans-serif',
            size = 1,
            speed = 0.6;
        Face = Face.split(' ');
        var n = Face.length;
        var a = size * 10;
        var ymouse = 0,
            xmouse = 0,
            scrll = 0,
            props = '<span style="font-family:' + font + ';font-size:' + size + 'em; color:#' + fCol + '">',
            props2 = '<span style="font-family:' + font + ';font-size:' + size + 'em; color:#' + dCol + '">';
        var Split = 360 / n;
        var Dsplit = 360 / D.length;
        var HandHeight = ClockHeight / 4.5; 
        var HandWidth = ClockWidth / 4.5;
        var HandY = -7,
            HandX = -2.5,
            step = 0.06,
            currStep = 0,
            y = [],
            x = [],
            Y = [],
            X = [],
            Dy = [],
            Dx = [],
            DY = [],
            DX = [];
        var i;

        for (i = 0; i < n; i++) {
            y[i] = 0;
            x[i] = 0;
            Y[i] = 0;
            X[i] = 0;
        }

        for (i = 0; i < D.length; i++) {
            Dy[i] = 0;
            Dx[i] = 0;
            DY[i] = 0;
            DX[i] = 0;
        }

        var wrapper = $('clock');
        var html = ''

        // Date wrapper
        html = '';
        for (i = 0; i < D.length; i++) {
            html += '<div class="Date" name="Date" style="position:absolute;top:0px;left:0;height:' + a + ';width:' + a + ';text-align:center">' + props2 + D[i] + '</span></div>';
        }
        $('Od').children[0].innerHTML = html;

        // Face wrapper
        html = '';
        for (i = 0; i < n; i++) {
            html += '<div class="Face" name="Face" style="position:absolute;top:0px;left:0;height:' + a + ';width:' + a + ';text-align:center">' + props + Face[i] + '</span></div>';
        }
        $('Of').children[0].innerHTML = html;

        // Hours wrapper
        html = '';
        for (i = 0; i < H.length; i++) {
            html += '<div class="Hours" name="Hours" style="position:absolute;width:16px;height:16px;font-family:Arial;font-size:16px;color:' + hCol + ';text-align:center;font-weight:bold">' + H[i] + '</div>';
        } 
        $('Oh').children[0].innerHTML = html;

        // Minute wrapper
        html = '';
        for (i = 0; i < M.length; i++) {
            html += '<div class="Minutes" name="Minutes" style="position:absolute;width:16px;height:16px;font-family:Arial;font-size:16px;color:' + mCol + ';text-align:center;font-weight:bold">' + M[i] + '</div>';
        } 
        $('Om').children[0].innerHTML = html;

        // Seconds wrapper
        html = '';
        for (i = 0; i < S.length; i++) {
            html += '<div class="Seconds" name="Seconds" style="position:absolute;width:16px;height:16px;font-family:Arial;font-size:16px;color:' + sCol + ';text-align:center;font-weight:bold">' + S[i] + '</div>';
        } 
        $('Os').children[0].innerHTML = html;

        // Mouse move event handler
        function Mouse(evnt) {
            if (typeof evnt === 'undefined') {
                ymouse = event.Y + ClockFromMouseY;
                xmouse = event.X + ClockFromMouseX;
            } else {
                ymouse = evnt.clientY + ClockFromMouseY;
                xmouse = evnt.clientX + ClockFromMouseX;
            }
        }

        document.onmousemove = Mouse;

        function ClockAndAssign() {
            var time = new Date();
            var secs = time.getSeconds();
            var sec = -1.57 + Math.PI * secs / 30;
            var mins = time.getMinutes();
            var min = -1.57 + Math.PI * mins / 30;
            var hr = time.getHours();
            var hrs = -1.575 + Math.PI * hr / 6 + Math.PI * parseInt(time.getMinutes(), 10) / 360;

            $('Od').style.top = window.document.body.scrollTop;
            $('Of').style.top = window.document.body.scrollTop;
            $('Oh').style.top = window.document.body.scrollTop;
            $('Om').style.top = window.document.body.scrollTop;
            $('Os').style.top = window.document.body.scrollTop;

            for (i = 0; i < n; i++) {
                var F = $$('Face')[i];
                F.style.top = y[i] + ClockHeight * Math.sin(-1.0471 + i * Split * Math.PI / 180) + scrll;
                F.style.left = x[i] + ClockWidth * Math.cos(-1.0471 + i * Split * Math.PI / 180);
            }

            for (i = 0; i < H.length; i++) {
                var HL = $$('Hours')[i];
                HL.style.top = y[i] + HandY + (i * HandHeight) * Math.sin(hrs) + scrll;
                HL.style.left = x[i] + HandX + (i * HandWidth) * Math.cos(hrs);
            }

            for (i = 0; i < M.length; i++) {
                var ML = $$('Minutes')[i].style;
                ML.top = y[i] + HandY + (i * HandHeight) * Math.sin(min) + scrll;
                ML.left = x[i] + HandX + (i * HandWidth) * Math.cos(min);
            }

            for (i = 0; i < S.length; i++) {
                var SL = $$('Seconds')[i].style;
                SL.top = y[i] + HandY + (i * HandHeight) * Math.sin(sec) + scrll;
                SL.left = x[i] + HandX + (i * HandWidth) * Math.cos(sec);
            }

            for (i = 0; i < D.length; i++) {
                var DL = $$('Date')[i].style;
                DL.top = Dy[i] + ClockHeight * 1.5 * Math.sin(currStep + i * Dsplit * Math.PI / 180) + scrll;
                DL.left = Dx[i] + ClockWidth * 1.5 * Math.cos(currStep + i * Dsplit * Math.PI / 180);
            }
            currStep -= step;
        }

        function Delay() {
            scrll = 0;
            Dy[0] = Math.round(DY[0] += ((ymouse) - DY[0]) * speed);
            Dx[0] = Math.round(DX[0] += ((xmouse) - DX[0]) * speed);
            for (i = 1; i < D.length; i++) {
                Dy[i] = Math.round(DY[i] += (Dy[i - 1] - DY[i]) * speed);
                Dx[i] = Math.round(DX[i] += (Dx[i - 1] - DX[i]) * speed);
            }
            y[0] = Math.round(Y[0] += ((ymouse) - Y[0]) * speed);
            x[0] = Math.round(X[0] += ((xmouse) - X[0]) * speed);
            for (i = 1; i < n; i++) {
                y[i] = Math.round(Y[i] += (y[i - 1] - Y[i]) * speed);
                x[i] = Math.round(X[i] += (x[i - 1] - X[i]) * speed);
            }
            ClockAndAssign();
            setTimeout(Delay, 20);
        }
        Delay();
    }());

    num = 1;
    function toggle() {
        num ^= 1; 
        if(num == 1){
            document.getElementById('clock').style.visibility="hidden";
            document.getElementById('clockCOLOR').disabled=true;
            document.getElementById('color1').disabled=true;
            document.getElementById('color2').disabled=true;
            document.getElementById('color3').disabled=true;
            document.getElementById('color4').disabled=true;
            document.getElementById('color5').disabled=true;
        } else {
            document.getElementById('clock').style.visibility="visible";
            document.getElementById('clockCOLOR').disabled=false;
            document.getElementById('color1').disabled=false;
            document.getElementById('color2').disabled=false;
            document.getElementById('color3').disabled=false;
            document.getElementById('color4').disabled=false;
            document.getElementById('color5').disabled=false;
        }
        document.getElementById("tog").value = num ?" REVIVE ":"KILL(切る)";
    }
    //-->
    </script>

    <div style="text-align:center;">
      <INPUT style="BORDER-RIGHT: grey 1px solid; BORDER-TOP:grey 1px solid; FONT-SIZE: 8pt; BORDER-LEFT: grey 1px solid; 
      COLOR: black; BORDER-BOTTOM: grey 1px solid; FONT-FAMILY: ms gothic; BACKGROUND-COLOR: silver"
      onclick="bg1()" type="button" value="&#13;&#10;">
      <INPUT style="BORDER-RIGHT: grey 1px solid; BORDER-TOP:grey 1px solid; FONT-SIZE: 8pt; BORDER-LEFT: grey 1px solid; 
      COLOR: black; BORDER-BOTTOM: grey 1px solid; FONT-FAMILY: ms gothic; BACKGROUND-COLOR: mediumblue"
      onclick="bg2()" type="button" value="&#13;&#10;">
      <INPUT style="BORDER-RIGHT: grey 1px solid; BORDER-TOP:grey 1px solid; FONT-SIZE: 8pt; BORDER-LEFT: grey 1px solid; 
      COLOR: black; BORDER-BOTTOM: grey 1px solid; FONT-FAMILY: ms gothic; BACKGROUND-COLOR: black"
      onclick="bg3()" type="button" value="&#13;&#10;">
    </div>
    <br>
    <div style="text-align:center;">
      <select id="clockCOLOR" disabled>
        <option style="background-color:silver;font-weight:bold" onclick="clockCOLOR1()">C</option>
        <option style="background-color:mediumblue;font-weight:bold" onclick="clockCOLOR2()">C</option>
        <option style="background-color:black;font-weight:bold" onclick="clockCOLOR3()">C</option> 
      </select>
      <select id="color1" disabled>
        <option style="background-color:silver;font-weight:bold" onclick="Col11()">D</option>
        <option style="background-color:mediumblue;font-weight:bold" onclick="Col12()">D</option>
        <option style="background-color:black;font-weight:bold" onclick="Col13()">D</option>
      </select>
      <select id="color2" disabled>
        <option style="background-color:silver;font-weight:bold" onclick="Col21()">F</option>
        <option style="background-color:mediumblue;font-weight:bold" onclick="Col22()">F</option>
        <option style="background-color:black;font-weight:bold"  onclick="Col23()">F</option>
      </select>
      <select id="color3" disabled>
        <option style="background-color:silver;font-weight:bold" onclick="Col31()">H</option>
        <option style="background-color:mediumblue;font-weight:bold" onclick="Col32()">H</option>
        <option style="background-color:black;font-weight:bold" onclick="Col33()">H</option>
      </select>
      <select id="color4" disabled>
        <option style="background-color:silver;font-weight:bold" onclick="Col41()">M</option>
        <option style="background-color:mediumblue;font-weight:bold" onclick="Col42()">M</option>
        <option style="background-color:black;font-weight:bold" onclick="Col43()">M</option>
      </select>
      <select id="color5" disabled>
        <option style="background-color:silver;font-weight:bold" onclick="Col51()">S</option>
        <option style="background-color:mediumblue;font-weight:bold" onclick="Col52()">S</option>
        <option style="background-color:black;font-weight:bold" onclick="Col53()">S</option>
      </select>
      <input id="tog" class="butt" type="button" value="出現" onclick="toggle()">
    </div>
  </body>
</html>